install question
David Gutman
dagutman at gmail.com
Thu Mar 29 23:13:00 EDT 2012
i pulled the latest tar ball from git, and did the typical
./configure, make, sudo make install
I then went to my python instance and tried to just import
openslide... but got the error below
import openslide
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/local/lib/python2.6/dist-packages/openslide/__init__.py",
line 32, in <module>
from openslide import lowlevel
File "/usr/local/lib/python2.6/dist-packages/openslide/lowlevel.py",
line 132, in <module>
get_level_count = _func('openslide_get_level_count', c_int32, [_OpenSlide])
File "/usr/local/lib/python2.6/dist-packages/openslide/lowlevel.py",
line 108, in _func
func = getattr(_lib, name)
File "/usr/lib/python2.6/ctypes/__init__.py", line 366, in __getattr__
func = self.__getitem__(name)
File "/usr/lib/python2.6/ctypes/__init__.py", line 371, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
AttributeError: /usr/local/lib/libopenslide.so.0: undefined symbol:
openslide_get_level_count
>>>
i am running
python
Python 2.6.5 (r265:79063, Apr 16 2010, 13:57:41)
[GCC 4.4.3] on linux2
Also.. when I tried to pull directly using git pull ...(git clone
git://github.com/openslide/openslide.git
) there was no ./configure script included .... the only way I could
build was by pulling the tarball directly.
git clone git://github.com/openslide/openslide.git
Initialized empty Git repository in /home/dgutman/temp/openslide/.git/
remote: Counting objects: 6123, done.
remote: Compressing objects: 100% (1891/1891), done.
remote: Total 6123 (delta 4269), reused 6025 (delta 4172)
Receiving objects: 100% (6123/6123), 1.31 MiB, done.
Resolving deltas: 100% (4269/4269), done.
dgutman at node15:~/temp$ ls
openslide
dgutman at node15:~/temp$ cd openslide/
dgutman at node15:~/temp/openslide$ ls
CHANGELOG.txt configure.ac LICENSE.txt openslide.pc.in TODO.txt
cmake CONTRIBUTING.txt m4 README.txt tools
CMakeLists.txt doc Makefile.am src
config.h.cmake lgpl-2.1.txt misc test
dgutman at node15:~/temp/openslide$ ./configure
-bash: ./configure: No such file or directory
dgutman at node15:~/temp/openslide$
--
David A Gutman, M.D. Ph.D.
Assistant Professor of Biomedical Informatics
Senior Research Scientist, Center for Comprehensive Informatics
Emory University School of Medicine
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