Need help urgent

Jonathan C. Henriksen jhenrik at
Fri Jul 8 18:05:34 EDT 2022


Take a look at QuPath and read through the docs.

It has built in tools to export tiles, included labeled image masks, for deep learning projects:

You will need to develop a script to convert the NDPI annotations into QuPath annotations. Search around on the active user forums, as someone may have already posted a similar question, e.g.

Kind Regards,

Jonathan Henriksen
Laboratory Medicine and Pathology
Digital Pathology Coordinator for Anatomic Pathology
Research IT Coordinator for NWBioSpecimen Shared Resource
University of Washington
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