Issues w/ Installing and Using OpenSlide
Manaswitha Edupalli
medupall at andrew.cmu.edu
Mon Jun 10 10:45:17 EDT 2019
I have had great difficulty installing and using Openslide. In order to
install:
1) pip install openslide-python
2) I downloaded the binaries for python from https://openslide.org
3) pip install openslides
4) I downloaded the binaries for openSlide, because python is just the
wrapper?
Over the course of this process, I have been encountering the same issue:
Traceback (most recent call last):
File "tiling_filtering.py", line 2, in <module>
import openslide
File
"/Users/mae4004/Library/Python/2.7/lib/python/site-packages/openslide/__init__.py",
line 29, in <module>
from openslide import lowlevel
File
"/Users/mae4004/Library/Python/2.7/lib/python/site-packages/openslide/lowlevel.py",
line 55, in <module>
"Is OpenSlide installed?")
ImportError: Couldn't locate OpenSlide dylib. Is OpenSlide installed?
I did some research, and it says the issue is that OpenSlide is not my
dylib search path. I have no idea how to add it. Im using a Mac OS Mojave V
10.14.2. Any suggestions?
I have tried installing by creating a Conda environment as well and I have
met with the same error. Any help would be much appreciated.
Thanks!
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