Fatal JRE error
Tim
ts+ml at rcmd.org
Wed May 14 12:34:58 EDT 2014
Hello list,
we have written a Java application which accesses the Aperio SVS Format
using OpenSlide via the java bridge. We use 'libopenslide.so.0.2.4' on
64bit Linux and include 'openslidejava.jar' in the Java project. I do
not know the version of openslidejava.jar and I don't know how to
determine it.
The application has been working fine for years on many computers, but
under all computers running OpenSuSE >= 13.2, it crashes with the
following JRE error:
#
# A fatal error has been detected by the Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x00007f22f92d3a04, pid=10239,
tid=139788194010880
#
# JRE version: OpenJDK Runtime Environment (7.0_51) (build
1.7.0_51-b00)
# Java VM: OpenJDK 64-Bit Server VM (24.45-b08 mixed mode linux-amd64
compressed oops)
# Problematic frame:
# C [libc.so.6+0x7ea04] cfree+0x14
#
# Failed to write core dump. Core dumps have been disabled. To enable
core dumping, try "ulimit -c unlimited" before starting Java again
#
# An error report file with more information is saved as:
# /tmp/jvm-10239/hs_error.log
#
# If you would like to submit a bug report, please include
# instructions on how to reproduce the bug and visit:
# http://icedtea.classpath.org/bugzilla
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
Java Result: 134
We installed OpenSlide by copying the libs from one computer to the
other manually (/lib64/libopenslide.so.0.2.4 and symlinks), both are
64bit Linux as mentioned.
I have put the hs_error.log file that is mentioned in the message here:
http://pastebin.com/YhG14CUb
(If needed, I can provide a core dump as well, but it is several GB in
size.)
Tbh I have no idea at all what the error is trying to tell me, and
changing the JRE (to v1.6) did not help. To me, the hs_error.log file
seems to suggest that the problem lies within OpenSlide, but I am no way
sure.
Can anybody tell me something about the error? Is it even related to
OpenSlide or OpenSlideJava? Is it related to new glibc versions? What do
I need to do? Recompile libopenslide on the new system? Get a later
version and recompile? Or is it a JVM bug?
Sorry for the confusion and thanks for your time,
--
Tim
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