OpenSlide & annotations?

[kris kvilekval]

Hi Mark,


As I mentioned last week, we have deployed bisque with openslide support
for management, annotation and analysis of large images. 

Here's an example: 
http://bisque.ece.ucsb.edu/client_service/view?resource=http://bisque.ece.ucsb.edu/data_service/image/4929796

Tile conversions are done lazily on our servers, so viewing a new set of
tiles can take a few seconds, but after that should be fast.

Kris

On Tue, 2014-03-11 at 15:58 -0600, Mark Ungrin wrote:
> Thanks!
> 
> Mark
> 
> On 3/11/2014 12:04 PM, kris kvilekval wrote:
> 
> > Hi, 
> > 
> >   I was going to announce it here when we release to stable, but based
> > on the question I thought it might be worthwhile to let you know 
> > sooner.
> > 
> > We have integrated openslide into our online platform for bioimage
> > management, annotation, and analysis (BISQUE) developed by the 
> > center for bioimage informatics at UCSB. 
> > 
> > BISQUE supports over 200+ bioimaging formats including 5D imaging (3D +
> > time + multi-channel) and is very scalable.  Bisque allows graphical
> > and textual annotations and can link data into complex graphs that are
> > searchable and analyzible. Analysis, provenance and flexible data
> > modeling are core to bisque.
> > 
> > More info here:
> > http://www.bioimage.ucsb.edu/bisque
> > 
> > We will deploy an openslide-enabled bisque to stable sometime next week
> > and it will be available full-time at http://bisque.ece.ucsb.edu (our
> > main bisque server) for public use.  We are wrapping up or 0.55 release
> > this week.
> > 
> > I will post a note here when we go online next week.
> > 
> > 
> >  
> > 
> > On Tue, 2014-03-11 at 11:48 -0600, Mark Ungrin wrote:
> > > What additional work would be required for OpenSlide to support
> > > annotations (ideally in the web browser)?
> > > 
> > > thanks
> > > 
> > > Mark