Openslide + MATLAB

[Yves Sucaet]

Thanks Mitko,

I have an engineer at our company that really wants to bring his MRXS-data 
into Matlab and has been unable to do thus far. He's going to try out your 
instructions and will get back to you when he runs into trouble.

Yves



From:   Mitko Veta <mitko.veta at gmail.com>
To:     openslide-users at lists.andrew.cmu.edu
Date:   29-10-13 20:30
Subject:        Openslide + MATLAB
Sent by:        
openslide-users-bounces+sucaet=histogenex.com at lists.andrew.cmu.edu



Hello everyone,

Around 3 years ago I wrote to this mailing list that I am working on a 
MATLAB wrapper for the Openslide library. My original plan was to build a 
comprehensive MATLAB digital slides viewer based on Openslide. 
Unfortunately, although I have a slide viewer that is good enough for my 
own needs, because of other engagements I did not manage to go beyond 
this.

Since my first email, several people wrote me asking for the code for 
reading digital slides in MATLAB using Openslide, and I gladly shared it 
with them. It seems that there is an increasing interest for accessing 
digital slides from MATLAB, so I decided to publicly share the code which 
can now be found here: 

http://www.isi.uu.nl/People/Mitko/openslide_mex.html

Note that this code does not include a slide viewer, but, it provides a 
MATLAB class that enables user-friendly access to the image data from 
digital slides. A major limitation is that only a single slide can be read 
at a time (two or more slides cannot be simultaniousely opened). However, 
this and other functionalities can be easily implemented using this code 
as a reference.

I hope you will find this useful. If you have any questions I will be glad 
to answer them.

Regards,

Mitko
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