gilgamesh: help with loading Python modules

[John Kitchin]

If you add this line:
source /etc/profile.d/modules.sh
to your .bashrc file, then you do not need the -V option to qsub.

-V is an ok option for one time runs in special environments, but it is
tedious to use all the time since you have to manually setup your
environment.

John

-----------------------------------
John Kitchin
Associate Professor
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
http://kitchingroup.cheme.cmu.edu




On Sun, May 22, 2011 at 6:37 PM, Rich Alesi <walesi at andrew.cmu.edu> wrote:

> You won't be able to load those modules directly by default.  To load your
> current environment interactively, add the -V option to qsub, this will
> bring your entire environment including the module command.
>
> -Rich
>
> On Sun, May 22, 2011 at 5:50 PM, Asad Hasan <ahasan at andrew.cmu.edu> wrote:
>
>> Hi,
>>
>> Using the webdocs i had used 'module load' my .bashrc to enable
>> loading Python modules like numpy, scipy etc. This works on the head
>> node.
>> However, i'm unable to load these modules on any worker node by using
>> 'module load'.
>>
>> In interactive mode on a worker node, i found that the module command
>> isn't recognized. I got this error message:
>> ----------------
>> -bash-3.2$ module
>> -bash: module: command not found
>> ----------------
>>
>> I'm sure i am missing something basic here !  Do anyone have pointers
>> on how to solve this issue, or atleast a workaround to load Python
>> modules ?
>>
>> Thanks in advance!
>>
>> asad hasan.
>>
>> _______________________________________________
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>> gilgamesh-users at lists.andrew.cmu.edu
>> https://lists.andrew.cmu.edu/mailman/listinfo/gilgamesh-users
>>
>
>
>
> --
> Rich Alesi
> Chemical Engineering
> PhD Candidate
> Carnegie Mellon University
> 412.983.4260
>
>
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> gilgamesh-users at lists.andrew.cmu.edu
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>
>
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