<div dir="ltr">Hi and thanks for hasty reply,<div><br></div><div>In detail I want to scale down a mrxs-file to level 1, 2, 3, and save as jpeg-compressed, pyramidal tiff.</div><div>Using </div><div><br></div><div>$vips openslideload --level 3 MIRAX_SLIDE.mrxs slide.tiff[tile,compression=lzw]</div><div><br></div><div>I get a single layer based on level 3 from original file, in lzw-compression.</div><div><br></div><div>It took me a while to realise that it was single layer so I would have to restructure the new file to a pyramidal format. Unfortunately, I attempted using ImageMagick to do this, and that&#39;s the one that seems produce an unreadable file for openslide:</div><div><br></div><div>$ convert level_3_slide.tiff -compress jpeg -quality 90 -define tiff:tile-geometry=256x256 ptif:output_im.tiff<br></div><div><br></div><div><br></div><div><div>$ openslide-write-png output_im.tiff 7500 15000 2 500 500 testImg.png</div><div>output_im.tiff: 0: Invalid tile byte count, tile 219.</div><div>openslide-write-png: TIFFRGBAImageGet failed</div></div><div><br></div><div>I just realised that VIPS succeeds:</div><div><br></div><div>$ vips --vips-progress tiffsave slide.tiff output.tiff --compression=deflate --tile --tile-width=256 --tile-height<br></div><div><br></div><div>$ openslide-write-png output.tiff 7500 15000 2 500 500 testImg.png #(no complaints)</div><div><br></div><div>Similarly, the convert-via-VIPS is readable through the Openslide Python Deepzoom server, but not the convert-via-ImageMagick.</div><div><br></div><div>Kind regards,</div><div>Jonas Ogaard</div><div><br></div><div><br></div><div>Below are description of the different stages of conversion, both described by IM and Openslide:</div><div><br></div><div>---------------------------------------MRXS-Layer3-to-tiff-converted Slide---------------------------------------<br></div><div><br></div><div><div>$ identify level_3_slide.tiff</div><div>level_3_slide.tiff TIFF 14621x30681 14621x30681+0+0 8-bit sRGB 27.15MB 0.000u 0:00.079</div><div><br></div><div>$ openslide-show-properties level_3_slide.tiff</div><div>openslide.level-count: &#39;1&#39;</div><div>openslide.level[0].downsample: &#39;1&#39;</div><div>openslide.level[0].height: &#39;30681&#39;</div><div>openslide.level[0].tile-height: &#39;128&#39;</div><div>openslide.level[0].tile-width: &#39;128&#39;</div><div>openslide.level[0].width: &#39;14621&#39;</div><div>openslide.vendor: &#39;generic-tiff&#39;</div><div>tiff.ResolutionUnit: &#39;centimeter&#39;</div><div>tiff.XResolution: &#39;10&#39;</div><div>tiff.YResolution: &#39;10&#39;</div></div><div><br></div><div>---------------------------------------VIPS-via-ImageMagick-converted Slide---------------------------------------<br></div><div><br></div><div><div>$ identify output_im.tiff</div><div>output_im.tiff[0] TIFF 14621x30681 14621x30681+0+0 8-bit sRGB 80.5KB 0.010u 0:00.000</div><div>output_im.tiff[1] TIFF 7310x15340 7310x15340+0+0 8-bit sRGB 80.5KB 0.000u 0:00.010</div><div>output_im.tiff[2] TIFF 3655x7670 3655x7670+0+0 8-bit sRGB 80.5KB 0.000u 0:00.010</div><div>output_im.tiff[3] TIFF 1827x3835 1827x3835+0+0 8-bit sRGB 80.5KB 0.000u 0:00.010</div><div>output_im.tiff[4] TIFF 913x1917 913x1917+0+0 8-bit sRGB 80.5KB 0.000u 0:00.010</div><div>output_im.tiff[5] TIFF 456x958 456x958+0+0 8-bit sRGB 80.5KB 0.000u 0:00.010</div><div>output_im.tiff[6] TIFF 228x479 228x479+0+0 8-bit sRGB 80.5KB 0.000u 0:00.010</div><div>output_im.tiff[7] TIFF 114x239 114x239+0+0 8-bit sRGB 80.5KB 0.000u 0:00.010</div><div>output_im.tiff[8] TIFF 57x119 57x119+0+0 8-bit sRGB 80.5KB 0.000u 0:00.010</div></div><div><br></div><div><div>$ openslide-show-properties output_im.tiff</div><div>openslide.level-count: &#39;9&#39;</div><div>openslide.level[0].downsample: &#39;1&#39;</div><div>openslide.level[0].height: &#39;30681&#39;</div><div>openslide.level[0].tile-height: &#39;256&#39;</div><div>openslide.level[0].tile-width: &#39;256&#39;</div><div>openslide.level[0].width: &#39;14621&#39;</div><div>openslide.level[1].downsample: &#39;2.0001009939769245&#39;</div><div>openslide.level[1].height: &#39;15340&#39;</div><div>openslide.level[1].tile-height: &#39;256&#39;</div><div>openslide.level[1].tile-width: &#39;256&#39;</div><div>openslide.level[1].width: &#39;7310&#39;</div><div>openslide.level[2].downsample: &#39;4.0002019879538491&#39;</div><div>openslide.level[2].height: &#39;7670&#39;</div><div>openslide.level[2].tile-height: &#39;256&#39;</div><div>openslide.level[2].tile-width: &#39;256&#39;</div><div>openslide.level[2].width: &#39;3655&#39;</div><div>openslide.level[3].downsample: &#39;8.0014987415338084&#39;</div><div>openslide.level[3].height: &#39;3835&#39;</div><div>openslide.level[3].tile-height: &#39;256&#39;</div><div>openslide.level[3].tile-width: &#39;256&#39;</div><div>openslide.level[3].width: &#39;1827&#39;</div><div>openslide.level[4].downsample: &#39;16.009466804477835&#39;</div><div>openslide.level[4].height: &#39;1917&#39;</div><div>openslide.level[4].tile-height: &#39;256&#39;</div><div>openslide.level[4].tile-width: &#39;256&#39;</div><div>openslide.level[4].width: &#39;913&#39;</div><div>openslide.level[5].downsample: &#39;32.044846262315495&#39;</div><div>openslide.level[5].height: &#39;958&#39;</div><div>openslide.level[5].tile-height: &#39;256&#39;</div><div>openslide.level[5].tile-width: &#39;256&#39;</div><div>openslide.level[5].width: &#39;456&#39;</div><div>openslide.level[6].downsample: &#39;64.089692524630991&#39;</div><div>openslide.level[6].height: &#39;479&#39;</div><div>openslide.level[6].tile-height: &#39;256&#39;</div><div>openslide.level[6].tile-width: &#39;256&#39;</div><div>openslide.level[6].width: &#39;228&#39;</div><div>openslide.level[7].downsample: &#39;128.31338545107539&#39;</div><div>openslide.level[7].height: &#39;239&#39;</div><div>openslide.level[7].tile-height: &#39;256&#39;</div><div>openslide.level[7].tile-width: &#39;256&#39;</div><div>openslide.level[7].width: &#39;114&#39;</div><div>openslide.level[8].downsample: &#39;257.16615067079465&#39;</div><div>openslide.level[8].height: &#39;119&#39;</div><div>openslide.level[8].tile-height: &#39;256&#39;</div><div>openslide.level[8].tile-width: &#39;256&#39;</div><div>openslide.level[8].width: &#39;57&#39;</div><div>openslide.quickhash-1: &#39;6dbc01af8348b39038277fd9cb161100140383011b9fa43beaf581de0f0daa56&#39;</div><div>openslide.vendor: &#39;generic-tiff&#39;</div><div>tiff.ResolutionUnit: &#39;centimeter&#39;</div><div>tiff.XResolution: &#39;10&#39;</div><div>tiff.YResolution: &#39;10&#39;</div></div><div><br></div><div>---------------------------------------VIPS-via-VIPS-converted Slide---------------------------------------<br></div><div><br></div><div><div>$ identify output.tiff</div><div>output.tiff[0] TIFF 14621x30681 14621x30681+0+0 8-bit sRGB 20.2MB 0.000u 0:00.000</div><div>output.tiff[1] TIFF 7310x15340 7310x15340+0+0 8-bit sRGB 20.2MB 0.000u 0:00.009</div><div>output.tiff[2] TIFF 3655x7670 3655x7670+0+0 8-bit sRGB 20.2MB 0.000u 0:00.009</div><div>output.tiff[3] TIFF 1827x3835 1827x3835+0+0 8-bit sRGB 20.2MB 0.000u 0:00.009</div><div>output.tiff[4] TIFF 913x1917 913x1917+0+0 8-bit sRGB 20.2MB 0.000u 0:00.009</div><div>output.tiff[5] TIFF 456x958 456x958+0+0 8-bit sRGB 20.2MB 0.000u 0:00.009</div><div>output.tiff[6] TIFF 228x479 228x479+0+0 8-bit sRGB 20.2MB 0.000u 0:00.009</div><div>output.tiff[7] TIFF 114x239 114x239+0+0 8-bit sRGB 20.2MB 0.000u 0:00.009</div><div><br></div><div>$ openslide-show-properties output.tiff</div><div>openslide.level-count: &#39;8&#39;</div><div>openslide.level[0].downsample: &#39;1&#39;</div><div>openslide.level[0].height: &#39;30681&#39;</div><div>openslide.level[0].tile-height: &#39;256&#39;</div><div>openslide.level[0].tile-width: &#39;256&#39;</div><div>openslide.level[0].width: &#39;14621&#39;</div><div>openslide.level[1].downsample: &#39;2.0001009939769245&#39;</div><div>openslide.level[1].height: &#39;15340&#39;</div><div>openslide.level[1].tile-height: &#39;256&#39;</div><div>openslide.level[1].tile-width: &#39;256&#39;</div><div>openslide.level[1].width: &#39;7310&#39;</div><div>openslide.level[2].downsample: &#39;4.0002019879538491&#39;</div><div>openslide.level[2].height: &#39;7670&#39;</div><div>openslide.level[2].tile-height: &#39;256&#39;</div><div>openslide.level[2].tile-width: &#39;256&#39;</div><div>openslide.level[2].width: &#39;3655&#39;</div><div>openslide.level[3].downsample: &#39;8.0014987415338084&#39;</div><div>openslide.level[3].height: &#39;3835&#39;</div><div>openslide.level[3].tile-height: &#39;256&#39;</div><div>openslide.level[3].tile-width: &#39;256&#39;</div><div>openslide.level[3].width: &#39;1827&#39;</div><div>openslide.level[4].downsample: &#39;16.009466804477835&#39;</div><div>openslide.level[4].height: &#39;1917&#39;</div><div>openslide.level[4].tile-height: &#39;256&#39;</div><div>openslide.level[4].tile-width: &#39;256&#39;</div><div>openslide.level[4].width: &#39;913&#39;</div><div>openslide.level[5].downsample: &#39;32.044846262315495&#39;</div><div>openslide.level[5].height: &#39;958&#39;</div><div>openslide.level[5].tile-height: &#39;256&#39;</div><div>openslide.level[5].tile-width: &#39;256&#39;</div><div>openslide.level[5].width: &#39;456&#39;</div><div>openslide.level[6].downsample: &#39;64.089692524630991&#39;</div><div>openslide.level[6].height: &#39;479&#39;</div><div>openslide.level[6].tile-height: &#39;256&#39;</div><div>openslide.level[6].tile-width: &#39;256&#39;</div><div>openslide.level[6].width: &#39;228&#39;</div><div>openslide.level[7].downsample: &#39;128.31338545107539&#39;</div><div>openslide.level[7].height: &#39;239&#39;</div><div>openslide.level[7].tile-height: &#39;256&#39;</div><div>openslide.level[7].tile-width: &#39;256&#39;</div><div>openslide.level[7].width: &#39;114&#39;</div><div>openslide.quickhash-1: &#39;681fafb09c1ee7f12034d5bb45a60643e678eb4a4c6752a99d613309ab1362f7&#39;</div><div>openslide.vendor: &#39;generic-tiff&#39;</div><div>tiff.ResolutionUnit: &#39;centimeter&#39;</div><div>tiff.XResolution: &#39;10&#39;</div><div>tiff.YResolution: &#39;10&#39;</div></div><div><br></div><div>---------------------------------------------Original Slide---------------------------------------------</div><div><div>$ openslide-show-properties MIRAX_SLIDE.mrxs</div><div>mirax.DATAFILE.FILE_0: &#39;Data0000.dat&#39;</div><div>mirax.DATAFILE.FILE_1: &#39;Data0001.dat&#39;</div><div>mirax.DATAFILE.FILE_10: &#39;Data0010.dat&#39;</div><div>mirax.DATAFILE.FILE_11: &#39;Data0011.dat&#39;</div><div>mirax.DATAFILE.FILE_12: &#39;Data0012.dat&#39;</div><div>mirax.DATAFILE.FILE_13: &#39;Data0013.dat&#39;</div><div>mirax.DATAFILE.FILE_14: &#39;Data0014.dat&#39;</div><div>mirax.DATAFILE.FILE_15: &#39;Data0015.dat&#39;</div><div>mirax.DATAFILE.FILE_16: &#39;Data0016.dat&#39;</div><div>mirax.DATAFILE.FILE_17: &#39;Data0017.dat&#39;</div><div>mirax.DATAFILE.FILE_18: &#39;Data0018.dat&#39;</div><div>mirax.DATAFILE.FILE_19: &#39;Data0019.dat&#39;</div><div>mirax.DATAFILE.FILE_2: &#39;Data0002.dat&#39;</div><div>mirax.DATAFILE.FILE_20: &#39;Data0020.dat&#39;</div><div>mirax.DATAFILE.FILE_21: &#39;Data0021.dat&#39;</div><div>mirax.DATAFILE.FILE_22: &#39;Data0022.dat&#39;</div><div>mirax.DATAFILE.FILE_23: &#39;Data0023.dat&#39;</div><div>mirax.DATAFILE.FILE_24: &#39;Data0024.dat&#39;</div><div>mirax.DATAFILE.FILE_3: &#39;Data0003.dat&#39;</div><div>mirax.DATAFILE.FILE_4: &#39;Data0004.dat&#39;</div><div>mirax.DATAFILE.FILE_5: &#39;Data0005.dat&#39;</div><div>mirax.DATAFILE.FILE_6: &#39;Data0006.dat&#39;</div><div>mirax.DATAFILE.FILE_7: &#39;Data0007.dat&#39;</div><div>mirax.DATAFILE.FILE_8: &#39;Data0008.dat&#39;</div><div>mirax.DATAFILE.FILE_9: &#39;Data0009.dat&#39;</div><div>mirax.DATAFILE.FILE_COUNT: &#39;25&#39;</div><div>mirax.GENERAL.ADAPTER_SIZE: &#39;1&#39;</div><div>mirax.GENERAL.CAMERA_TYPE: &#39;Zeiss ICc1 or Marlin F146C&#39;</div><div>mirax.GENERAL.CURRENT_SLIDE_VERSION: &#39;1.9&#39;</div><div>mirax.GENERAL.CameraImageDivisionsPerSide: &#39;2&#39;</div><div>mirax.GENERAL.IMAGENUMBER_X: &#39;292&#39;</div><div>mirax.GENERAL.IMAGENUMBER_Y: &#39;876&#39;</div><div>mirax.GENERAL.IMAGE_OVERLAP_MICROMETERS_X: &#39;0&#39;</div><div>mirax.GENERAL.IMAGE_OVERLAP_MICROMETERS_Y: &#39;0&#39;</div><div>mirax.GENERAL.OBJECTIVE_MAGNIFICATION: &#39;20&#39;</div><div>mirax.GENERAL.OBJECTIVE_NAME: &#39;Plan-Apochromat&#39;</div><div>mirax.GENERAL.OPTOVAR_SIZE: &#39;1.60000002384186&#39;</div><div>mirax.GENERAL.PROJECT_NAME: &#39;ProjectName&#39;</div><div>mirax.GENERAL.SLIDE_CONTENT: &#39;DIGITAL_SLIDE&#39;</div><div>mirax.GENERAL.SLIDE_CREATIONDATETIME: &#39;05/09/2014 08:22:36&#39;</div><div>mirax.GENERAL.SLIDE_ID: &#39;A256B35245064907A6A27B43A760E3AB&#39;</div><div>mirax.GENERAL.SLIDE_NAME: &#39;5_7N_V_V&#39;</div><div>mirax.GENERAL.SLIDE_POSITION_X: &#39;0&#39;</div><div>mirax.GENERAL.SLIDE_POSITION_Y: &#39;0&#39;</div><div>mirax.GENERAL.SLIDE_TYPE: &#39;SLIDE_TYPE_BRIGHTFIELD&#39;</div><div>mirax.GENERAL.SLIDE_VERSION: &#39;01.02&#39;</div><div>mirax.GENERAL.VIMSLIDE_CP_BRIGHTNESS: &#39;0&#39;</div><div>mirax.GENERAL.VIMSLIDE_CP_COLOR_BALANCE_BLUE: &#39;0&#39;</div><div>mirax.GENERAL.VIMSLIDE_CP_COLOR_BALANCE_GREEN: &#39;0&#39;</div><div>mirax.GENERAL.VIMSLIDE_CP_COLOR_BALANCE_RED: &#39;0&#39;</div><div>mirax.GENERAL.VIMSLIDE_CP_CONTRAST: &#39;0&#39;</div><div>mirax.GENERAL.VIMSLIDE_CP_GAMMA: &#39;1&#39;</div><div>mirax.GENERAL.VIMSLIDE_SLIDE_FLIPHORZ: &#39;False&#39;</div><div>mirax.GENERAL.VIMSLIDE_SLIDE_FLIPVERT: &#39;False&#39;</div><div>mirax.GENERAL.VIMSLIDE_SLIDE_ROTATION: &#39;360&#39;</div><div>mirax.HIERARCHICAL.HIER_0_COUNT: &#39;10&#39;</div><div>mirax.HIERARCHICAL.HIER_0_DEFAULT: &#39;0&#39;</div><div>mirax.HIERARCHICAL.HIER_0_NAME: &#39;Slide zoom level&#39;</div><div>mirax.HIERARCHICAL.HIER_0_SECTION: &#39;LAYER_0_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_0: &#39;ZoomLevel_0&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_0_SECTION: &#39;LAYER_0_LEVEL_0_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_1: &#39;ZoomLevel_1&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_1_SECTION: &#39;LAYER_0_LEVEL_1_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_2: &#39;ZoomLevel_2&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_2_SECTION: &#39;LAYER_0_LEVEL_2_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_3: &#39;ZoomLevel_3&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_3_SECTION: &#39;LAYER_0_LEVEL_3_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_4: &#39;ZoomLevel_4&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_4_SECTION: &#39;LAYER_0_LEVEL_4_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_5: &#39;ZoomLevel_5&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_5_SECTION: &#39;LAYER_0_LEVEL_5_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_6: &#39;ZoomLevel_6&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_6_SECTION: &#39;LAYER_0_LEVEL_6_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_7: &#39;ZoomLevel_7&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_7_SECTION: &#39;LAYER_0_LEVEL_7_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_8: &#39;ZoomLevel_8&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_8_SECTION: &#39;LAYER_0_LEVEL_8_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_9: &#39;ZoomLevel_9&#39;</div><div>mirax.HIERARCHICAL.HIER_0_VAL_9_SECTION: &#39;LAYER_0_LEVEL_9_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_1_COUNT: &#39;3&#39;</div><div>mirax.HIERARCHICAL.HIER_1_DEFAULT: &#39;0&#39;</div><div>mirax.HIERARCHICAL.HIER_1_NAME: &#39;Slide filter level&#39;</div><div>mirax.HIERARCHICAL.HIER_1_SECTION: &#39;LAYER_1_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_1_VAL_0: &#39;FilterLevel_0&#39;</div><div>mirax.HIERARCHICAL.HIER_1_VAL_0_SECTION: &#39;LAYER_1_LEVEL_0_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_1_VAL_1: &#39;FilterLevel_1&#39;</div><div>mirax.HIERARCHICAL.HIER_1_VAL_1_SECTION: &#39;LAYER_1_LEVEL_1_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_1_VAL_2: &#39;FilterLevel_2&#39;</div><div>mirax.HIERARCHICAL.HIER_1_VAL_2_SECTION: &#39;LAYER_1_LEVEL_2_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_2_COUNT: &#39;2&#39;</div><div>mirax.HIERARCHICAL.HIER_2_DEFAULT: &#39;0&#39;</div><div>mirax.HIERARCHICAL.HIER_2_NAME: &#39;Scan info layer&#39;</div><div>mirax.HIERARCHICAL.HIER_2_SECTION: &#39;LAYER_2_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_2_VAL_0: &#39;ScanInfoLayer_DefaultLevel&#39;</div><div>mirax.HIERARCHICAL.HIER_2_VAL_0_SECTION: &#39;LAYER_2_LEVEL_0_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_2_VAL_1: &#39;ScanInfoLayer_XMLInfoLevel&#39;</div><div>mirax.HIERARCHICAL.HIER_2_VAL_1_SECTION: &#39;LAYER_2_LEVEL_1_SECTION&#39;</div><div>mirax.HIERARCHICAL.HIER_COUNT: &#39;3&#39;</div><div>mirax.HIERARCHICAL.INDEXFILE: &#39;Index.dat&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_COUNT: &#39;10&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_NAME: &#39;Scan data layer&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_SECTION: &#39;NONHIERLAYER_0_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_0: &#39;ScanDataLayer_ScanMap&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_0_IMAGENUMBER_X: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_0_IMAGENUMBER_Y: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_0_SECTION: &#39;NONHIERLAYER_0_LEVEL_0_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_1: &#39;ScanDataLayer_XMLInfoHeader&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_1_IMAGENUMBER_X: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_1_IMAGENUMBER_Y: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_1_SECTION: &#39;NONHIERLAYER_0_LEVEL_1_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_2: &#39;ScanDataLayer_SlideThumbnail&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_2_IMAGENUMBER_X: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_2_IMAGENUMBER_Y: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_2_SECTION: &#39;NONHIERLAYER_0_LEVEL_2_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_3: &#39;ScanDataLayer_SlideBarcode&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_3_IMAGENUMBER_X: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_3_IMAGENUMBER_Y: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_3_SECTION: &#39;NONHIERLAYER_0_LEVEL_3_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_4: &#39;ScanDataLayer_SlidePreview&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_4_IMAGENUMBER_X: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_4_IMAGENUMBER_Y: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_4_SECTION: &#39;NONHIERLAYER_0_LEVEL_4_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_5: &#39;ScanDataLayer_StagePositionMap&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_5_IMAGENUMBER_X: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_5_IMAGENUMBER_Y: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_5_SECTION: &#39;NONHIERLAYER_0_LEVEL_5_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_6: &#39;ScanDataLayer_Empty&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_6_IMAGENUMBER_X: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_6_IMAGENUMBER_Y: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_6_SECTION: &#39;NONHIERLAYER_0_LEVEL_6_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_7: &#39;ProfileXMLHeader&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_7_IMAGENUMBER_X: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_7_IMAGENUMBER_Y: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_7_SECTION: &#39;NONHIERLAYER_0_LEVEL_7_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_8: &#39;ProfileXML&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_8_IMAGENUMBER_X: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_8_IMAGENUMBER_Y: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_8_SECTION: &#39;NONHIERLAYER_0_LEVEL_8_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_9: &#39;ScannedFOVsMap&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_9_IMAGENUMBER_X: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_9_IMAGENUMBER_Y: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_0_VAL_9_SECTION: &#39;NONHIERLAYER_0_LEVEL_9_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_1_COUNT: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_1_NAME: &#39;VIMSLIDE_HISTOGRAM_DATA&#39;</div><div>mirax.HIERARCHICAL.NONHIER_1_SECTION: &#39;NONHIERLAYER_1_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_1_VAL_0: &#39;default&#39;</div><div>mirax.HIERARCHICAL.NONHIER_1_VAL_0_IMAGENUMBER_X: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_1_VAL_0_IMAGENUMBER_Y: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_1_VAL_0_SECTION: &#39;NONHIERLAYER_1_LEVEL_0_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_2_COUNT: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_2_NAME: &#39;StitchingLayer&#39;</div><div>mirax.HIERARCHICAL.NONHIER_2_SECTION: &#39;NONHIERLAYER_2_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_2_VAL_0: &#39;DataLevel_V1.0&#39;</div><div>mirax.HIERARCHICAL.NONHIER_2_VAL_0_IMAGENUMBER_X: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_2_VAL_0_IMAGENUMBER_Y: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_2_VAL_0_SECTION: &#39;NONHIERLAYER_2_LEVEL_0_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_3_COUNT: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_3_NAME: &#39;VIMSLIDE_POSITION_BUFFER&#39;</div><div>mirax.HIERARCHICAL.NONHIER_3_SECTION: &#39;NONHIERLAYER_3_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_3_VAL_0: &#39;default&#39;</div><div>mirax.HIERARCHICAL.NONHIER_3_VAL_0_IMAGENUMBER_X: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_3_VAL_0_IMAGENUMBER_Y: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_3_VAL_0_SECTION: &#39;NONHIERLAYER_3_LEVEL_0_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_4_COUNT: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_4_NAME: &#39;VIM_PREVIEW_LAYER&#39;</div><div>mirax.HIERARCHICAL.NONHIER_4_SECTION: &#39;NONHIERLAYER_4_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_4_VAL_0: &#39;default&#39;</div><div>mirax.HIERARCHICAL.NONHIER_4_VAL_0_IMAGENUMBER_X: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_4_VAL_0_IMAGENUMBER_Y: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_4_VAL_0_SECTION: &#39;NONHIERLAYER_4_LEVEL_0_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_5_COUNT: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_5_NAME: &#39;Slide object layer&#39;</div><div>mirax.HIERARCHICAL.NONHIER_5_SECTION: &#39;NONHIERLAYER_5_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_5_VAL_0: &#39;SlideObjectLayer_SlideFlag&#39;</div><div>mirax.HIERARCHICAL.NONHIER_5_VAL_0_IMAGENUMBER_X: &#39;2&#39;</div><div>mirax.HIERARCHICAL.NONHIER_5_VAL_0_IMAGENUMBER_Y: &#39;1&#39;</div><div>mirax.HIERARCHICAL.NONHIER_5_VAL_0_SECTION: &#39;NONHIERLAYER_5_LEVEL_0_SECTION&#39;</div><div>mirax.HIERARCHICAL.NONHIER_COUNT: &#39;6&#39;</div><div>mirax.HIERARCHICAL.PAGEELEMENTCOUNT: &#39;128&#39;</div><div>mirax.HIERARCHICAL.PAGELENGTH: &#39;2048&#39;</div><div>mirax.LAYER_0_LEVEL_0_SECTION.DIGITIZER_HEIGHT: &#39;364&#39;</div><div>mirax.LAYER_0_LEVEL_0_SECTION.DIGITIZER_WIDTH: &#39;484&#39;</div><div>mirax.LAYER_0_LEVEL_0_SECTION.IMAGE_COMPRESSION_FACTOR: &#39;90&#39;</div><div>mirax.LAYER_0_LEVEL_0_SECTION.IMAGE_CONCAT_FACTOR: &#39;0&#39;</div><div>mirax.LAYER_0_LEVEL_0_SECTION.IMAGE_FILL_COLOR_BGR: &#39;16777215&#39;</div><div>mirax.LAYER_0_LEVEL_0_SECTION.IMAGE_FORMAT: &#39;JPEG&#39;</div><div>mirax.LAYER_0_LEVEL_0_SECTION.MICROMETER_PER_PIXEL_X: &#39;0.205358984543218&#39;</div><div>mirax.LAYER_0_LEVEL_0_SECTION.MICROMETER_PER_PIXEL_Y: &#39;0.204395601349872&#39;</div><div>mirax.LAYER_0_LEVEL_0_SECTION.OVERLAP_X: &#39;168&#39;</div><div>mirax.LAYER_0_LEVEL_0_SECTION.OVERLAP_Y: &#39;168&#39;</div><div>mirax.LAYER_0_LEVEL_1_SECTION.DIGITIZER_HEIGHT: &#39;364&#39;</div><div>mirax.LAYER_0_LEVEL_1_SECTION.DIGITIZER_WIDTH: &#39;484&#39;</div><div>mirax.LAYER_0_LEVEL_1_SECTION.IMAGE_COMPRESSION_FACTOR: &#39;90&#39;</div><div>mirax.LAYER_0_LEVEL_1_SECTION.IMAGE_CONCAT_FACTOR: &#39;1&#39;</div><div>mirax.LAYER_0_LEVEL_1_SECTION.IMAGE_FILL_COLOR_BGR: &#39;16777215&#39;</div><div>mirax.LAYER_0_LEVEL_1_SECTION.IMAGE_FORMAT: &#39;JPEG&#39;</div><div>mirax.LAYER_0_LEVEL_1_SECTION.MICROMETER_PER_PIXEL_X: &#39;0.410717969086436&#39;</div><div>mirax.LAYER_0_LEVEL_1_SECTION.MICROMETER_PER_PIXEL_Y: &#39;0.408791202699745&#39;</div><div>mirax.LAYER_0_LEVEL_1_SECTION.OVERLAP_X: &#39;84&#39;</div><div>mirax.LAYER_0_LEVEL_1_SECTION.OVERLAP_Y: &#39;84&#39;</div><div>mirax.LAYER_0_LEVEL_2_SECTION.DIGITIZER_HEIGHT: &#39;364&#39;</div><div>mirax.LAYER_0_LEVEL_2_SECTION.DIGITIZER_WIDTH: &#39;484&#39;</div><div>mirax.LAYER_0_LEVEL_2_SECTION.IMAGE_COMPRESSION_FACTOR: &#39;90&#39;</div><div>mirax.LAYER_0_LEVEL_2_SECTION.IMAGE_CONCAT_FACTOR: &#39;1&#39;</div><div>mirax.LAYER_0_LEVEL_2_SECTION.IMAGE_FILL_COLOR_BGR: &#39;16777215&#39;</div><div>mirax.LAYER_0_LEVEL_2_SECTION.IMAGE_FORMAT: &#39;JPEG&#39;</div><div>mirax.LAYER_0_LEVEL_2_SECTION.MICROMETER_PER_PIXEL_X: &#39;0.821435938172873&#39;</div><div>mirax.LAYER_0_LEVEL_2_SECTION.MICROMETER_PER_PIXEL_Y: &#39;0.817582405399489&#39;</div><div>mirax.LAYER_0_LEVEL_2_SECTION.OVERLAP_X: &#39;42&#39;</div><div>mirax.LAYER_0_LEVEL_2_SECTION.OVERLAP_Y: &#39;42&#39;</div><div>mirax.LAYER_0_LEVEL_3_SECTION.DIGITIZER_HEIGHT: &#39;364&#39;</div><div>mirax.LAYER_0_LEVEL_3_SECTION.DIGITIZER_WIDTH: &#39;484&#39;</div><div>mirax.LAYER_0_LEVEL_3_SECTION.IMAGE_COMPRESSION_FACTOR: &#39;90&#39;</div><div>mirax.LAYER_0_LEVEL_3_SECTION.IMAGE_CONCAT_FACTOR: &#39;1&#39;</div><div>mirax.LAYER_0_LEVEL_3_SECTION.IMAGE_FILL_COLOR_BGR: &#39;16777215&#39;</div><div>mirax.LAYER_0_LEVEL_3_SECTION.IMAGE_FORMAT: &#39;JPEG&#39;</div><div>mirax.LAYER_0_LEVEL_3_SECTION.MICROMETER_PER_PIXEL_X: &#39;1.64287187634575&#39;</div><div>mirax.LAYER_0_LEVEL_3_SECTION.MICROMETER_PER_PIXEL_Y: &#39;1.63516481079898&#39;</div><div>mirax.LAYER_0_LEVEL_3_SECTION.OVERLAP_X: &#39;21&#39;</div><div>mirax.LAYER_0_LEVEL_3_SECTION.OVERLAP_Y: &#39;21&#39;</div><div>mirax.LAYER_0_LEVEL_4_SECTION.DIGITIZER_HEIGHT: &#39;364&#39;</div><div>mirax.LAYER_0_LEVEL_4_SECTION.DIGITIZER_WIDTH: &#39;484&#39;</div><div>mirax.LAYER_0_LEVEL_4_SECTION.IMAGE_COMPRESSION_FACTOR: &#39;90&#39;</div><div>mirax.LAYER_0_LEVEL_4_SECTION.IMAGE_CONCAT_FACTOR: &#39;1&#39;</div><div>mirax.LAYER_0_LEVEL_4_SECTION.IMAGE_FILL_COLOR_BGR: &#39;16777215&#39;</div><div>mirax.LAYER_0_LEVEL_4_SECTION.IMAGE_FORMAT: &#39;JPEG&#39;</div><div>mirax.LAYER_0_LEVEL_4_SECTION.MICROMETER_PER_PIXEL_X: &#39;3.28227777826882&#39;</div><div>mirax.LAYER_0_LEVEL_4_SECTION.MICROMETER_PER_PIXEL_Y: &#39;3.26571051196293&#39;</div><div>mirax.LAYER_0_LEVEL_4_SECTION.OVERLAP_X: &#39;10.5&#39;</div><div>mirax.LAYER_0_LEVEL_4_SECTION.OVERLAP_Y: &#39;10.5&#39;</div><div>mirax.LAYER_0_LEVEL_5_SECTION.DIGITIZER_HEIGHT: &#39;364&#39;</div><div>mirax.LAYER_0_LEVEL_5_SECTION.DIGITIZER_WIDTH: &#39;484&#39;</div><div>mirax.LAYER_0_LEVEL_5_SECTION.IMAGE_COMPRESSION_FACTOR: &#39;90&#39;</div><div>mirax.LAYER_0_LEVEL_5_SECTION.IMAGE_CONCAT_FACTOR: &#39;1&#39;</div><div>mirax.LAYER_0_LEVEL_5_SECTION.IMAGE_FILL_COLOR_BGR: &#39;16777215&#39;</div><div>mirax.LAYER_0_LEVEL_5_SECTION.IMAGE_FORMAT: &#39;JPEG&#39;</div><div>mirax.LAYER_0_LEVEL_5_SECTION.MICROMETER_PER_PIXEL_X: &#39;6.56455555653764&#39;</div><div>mirax.LAYER_0_LEVEL_5_SECTION.MICROMETER_PER_PIXEL_Y: &#39;6.53142102392586&#39;</div><div>mirax.LAYER_0_LEVEL_5_SECTION.OVERLAP_X: &#39;5.25&#39;</div><div>mirax.LAYER_0_LEVEL_5_SECTION.OVERLAP_Y: &#39;5.25&#39;</div><div>mirax.LAYER_0_LEVEL_6_SECTION.DIGITIZER_HEIGHT: &#39;364&#39;</div><div>mirax.LAYER_0_LEVEL_6_SECTION.DIGITIZER_WIDTH: &#39;484&#39;</div><div>mirax.LAYER_0_LEVEL_6_SECTION.IMAGE_COMPRESSION_FACTOR: &#39;90&#39;</div><div>mirax.LAYER_0_LEVEL_6_SECTION.IMAGE_CONCAT_FACTOR: &#39;1&#39;</div><div>mirax.LAYER_0_LEVEL_6_SECTION.IMAGE_FILL_COLOR_BGR: &#39;16777215&#39;</div><div>mirax.LAYER_0_LEVEL_6_SECTION.IMAGE_FORMAT: &#39;JPEG&#39;</div><div>mirax.LAYER_0_LEVEL_6_SECTION.MICROMETER_PER_PIXEL_X: &#39;13.1154917032069&#39;</div><div>mirax.LAYER_0_LEVEL_6_SECTION.MICROMETER_PER_PIXEL_Y: &#39;13.0447994483381&#39;</div><div>mirax.LAYER_0_LEVEL_6_SECTION.OVERLAP_X: &#39;2.625&#39;</div><div>mirax.LAYER_0_LEVEL_6_SECTION.OVERLAP_Y: &#39;2.625&#39;</div><div>mirax.LAYER_0_LEVEL_7_SECTION.DIGITIZER_HEIGHT: &#39;364&#39;</div><div>mirax.LAYER_0_LEVEL_7_SECTION.DIGITIZER_WIDTH: &#39;484&#39;</div><div>mirax.LAYER_0_LEVEL_7_SECTION.IMAGE_COMPRESSION_FACTOR: &#39;90&#39;</div><div>mirax.LAYER_0_LEVEL_7_SECTION.IMAGE_CONCAT_FACTOR: &#39;1&#39;</div><div>mirax.LAYER_0_LEVEL_7_SECTION.IMAGE_FILL_COLOR_BGR: &#39;16777215&#39;</div><div>mirax.LAYER_0_LEVEL_7_SECTION.IMAGE_FORMAT: &#39;JPEG&#39;</div><div>mirax.LAYER_0_LEVEL_7_SECTION.MICROMETER_PER_PIXEL_X: &#39;26.2309834064139&#39;</div><div>mirax.LAYER_0_LEVEL_7_SECTION.MICROMETER_PER_PIXEL_Y: &#39;26.0895988966762&#39;</div><div>mirax.LAYER_0_LEVEL_7_SECTION.OVERLAP_X: &#39;1.3125&#39;</div><div>mirax.LAYER_0_LEVEL_7_SECTION.OVERLAP_Y: &#39;1.3125&#39;</div><div>mirax.LAYER_0_LEVEL_8_SECTION.DIGITIZER_HEIGHT: &#39;364&#39;</div><div>mirax.LAYER_0_LEVEL_8_SECTION.DIGITIZER_WIDTH: &#39;484&#39;</div><div>mirax.LAYER_0_LEVEL_8_SECTION.IMAGE_COMPRESSION_FACTOR: &#39;90&#39;</div><div>mirax.LAYER_0_LEVEL_8_SECTION.IMAGE_CONCAT_FACTOR: &#39;1&#39;</div><div>mirax.LAYER_0_LEVEL_8_SECTION.IMAGE_FILL_COLOR_BGR: &#39;16777215&#39;</div><div>mirax.LAYER_0_LEVEL_8_SECTION.IMAGE_FORMAT: &#39;JPEG&#39;</div><div>mirax.LAYER_0_LEVEL_8_SECTION.MICROMETER_PER_PIXEL_X: &#39;52.4077705661203&#39;</div><div>mirax.LAYER_0_LEVEL_8_SECTION.MICROMETER_PER_PIXEL_Y: &#39;52.1075230711089&#39;</div><div>mirax.LAYER_0_LEVEL_8_SECTION.OVERLAP_X: &#39;0.65625&#39;</div><div>mirax.LAYER_0_LEVEL_8_SECTION.OVERLAP_Y: &#39;0.65625&#39;</div><div>mirax.LAYER_0_LEVEL_9_SECTION.DIGITIZER_HEIGHT: &#39;364&#39;</div><div>mirax.LAYER_0_LEVEL_9_SECTION.DIGITIZER_WIDTH: &#39;484&#39;</div><div>mirax.LAYER_0_LEVEL_9_SECTION.IMAGE_COMPRESSION_FACTOR: &#39;90&#39;</div><div>mirax.LAYER_0_LEVEL_9_SECTION.IMAGE_CONCAT_FACTOR: &#39;1&#39;</div><div>mirax.LAYER_0_LEVEL_9_SECTION.IMAGE_FILL_COLOR_BGR: &#39;16777215&#39;</div><div>mirax.LAYER_0_LEVEL_9_SECTION.IMAGE_FORMAT: &#39;JPEG&#39;</div><div>mirax.LAYER_0_LEVEL_9_SECTION.MICROMETER_PER_PIXEL_X: &#39;104.815541132241&#39;</div><div>mirax.LAYER_0_LEVEL_9_SECTION.MICROMETER_PER_PIXEL_Y: &#39;104.215046142218&#39;</div><div>mirax.LAYER_0_LEVEL_9_SECTION.OVERLAP_X: &#39;0.328125&#39;</div><div>mirax.LAYER_0_LEVEL_9_SECTION.OVERLAP_Y: &#39;0.328125&#39;</div><div>mirax.LAYER_0_SECTION.GAMMA_APPLIED: &#39;False&#39;</div><div>mirax.LAYER_0_SECTION.GAMMA_VALUE: &#39;1&#39;</div><div>mirax.LAYER_0_SECTION.SHARPENED: &#39;False&#39;</div><div>mirax.LAYER_0_SECTION.SQRT2_RESIZED: &#39;True&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.ACTIVE: &#39;ON&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.COLOR_B: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.COLOR_G: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.COLOR_R: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.DATA_IN_THIS_FILTER_LEVEL: &#39;FilterLevel_0&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.DIGITALGAIN: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.EXPOSUREPERCENTAGE: &#39;100&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.EXPOSURE_TIME: &#39;6099&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.EXTENDED_STEP_COUNT: &#39;1&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.EXTENDED_STEP_SIZE: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.FILTER_NAME: &#39;Optovar 1.6x&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.FILTER_REAL_POSITION: &#39;9&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.IS_MASTER_FILTER: &#39;True&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.IS_STITCHING_FILTER: &#39;1&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.MODIFY: &#39;ON&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.STORING_CHANNEL_NUMBER: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.THRESHOLD: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.USE_BLUE_CHANNEL: &#39;False&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.USE_GREEN_CHANNEL: &#39;False&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.USE_RED_CHANNEL: &#39;False&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.XDIFF: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.YDIFF: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_0_SECTION.ZDIFF: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.ACTIVE: &#39;ON&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.COLOR_B: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.COLOR_G: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.COLOR_R: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.DATA_IN_THIS_FILTER_LEVEL: &#39;FilterLevel_0&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.DIGITALGAIN: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.EXPOSUREPERCENTAGE: &#39;100&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.EXTENDED_STEP_COUNT: &#39;1&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.EXTENDED_STEP_SIZE: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.FILTER_NAME: &#39;Optovar 1.6x&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.FILTER_REAL_POSITION: &#39;9&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.IS_MASTER_FILTER: &#39;True&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.IS_STITCHING_FILTER: &#39;1&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.MODIFY: &#39;ON&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.STORING_CHANNEL_NUMBER: &#39;1&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.THRESHOLD: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.USE_BLUE_CHANNEL: &#39;False&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.USE_GREEN_CHANNEL: &#39;False&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.USE_RED_CHANNEL: &#39;False&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.XDIFF: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.YDIFF: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_1_SECTION.ZDIFF: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.ACTIVE: &#39;ON&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.COLOR_B: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.COLOR_G: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.COLOR_R: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.DATA_IN_THIS_FILTER_LEVEL: &#39;FilterLevel_0&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.DIGITALGAIN: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.EXPOSUREPERCENTAGE: &#39;100&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.EXTENDED_STEP_COUNT: &#39;1&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.EXTENDED_STEP_SIZE: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.FILTER_NAME: &#39;Optovar 1.6x&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.FILTER_REAL_POSITION: &#39;9&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.IS_MASTER_FILTER: &#39;True&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.IS_STITCHING_FILTER: &#39;1&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.MODIFY: &#39;ON&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.STORING_CHANNEL_NUMBER: &#39;2&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.THRESHOLD: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.USE_BLUE_CHANNEL: &#39;False&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.USE_GREEN_CHANNEL: &#39;False&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.USE_RED_CHANNEL: &#39;False&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.XDIFF: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.YDIFF: &#39;0&#39;</div><div>mirax.LAYER_1_LEVEL_2_SECTION.ZDIFF: &#39;0&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_0_SECTION.SCANMAP_IMAGE_HEIGHT: &#39;438&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_0_SECTION.SCANMAP_IMAGE_TYPE: &#39;PNG&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_0_SECTION.SCANMAP_IMAGE_WIDTH: &#39;146&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_2_SECTION.THUMBNAIL_IMAGE_HEIGHT: &#39;1105&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_2_SECTION.THUMBNAIL_IMAGE_TYPE: &#39;JPEG&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_2_SECTION.THUMBNAIL_IMAGE_WIDTH: &#39;533&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_3_SECTION.BARCODE_IMAGE_HEIGHT: &#39;435&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_3_SECTION.BARCODE_IMAGE_TYPE: &#39;JPEG&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_3_SECTION.BARCODE_IMAGE_WIDTH: &#39;576&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_4_SECTION.PREVIEW_IMAGE_HEIGHT: &#39;1918&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_4_SECTION.PREVIEW_IMAGE_TYPE: &#39;JPEG&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_4_SECTION.PREVIEW_IMAGE_WIDTH: &#39;914&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_5_SECTION.STAGEPOSMAP_IMAGE_HEIGHT: &#39;438&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_5_SECTION.STAGEPOSMAP_IMAGE_TYPE: &#39;PNG&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_5_SECTION.STAGEPOSMAP_IMAGE_WIDTH: &#39;146&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_9_SECTION.SCANNED_FOVS_MAP_IMAGE_HEIGHT: &#39;438&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_9_SECTION.SCANNED_FOVS_MAP_IMAGE_TYPE: &#39;PNG&#39;</div><div>mirax.NONHIERLAYER_0_LEVEL_9_SECTION.SCANNED_FOVS_MAP_IMAGE_WIDTH: &#39;146&#39;</div><div>mirax.NONHIERLAYER_0_SECTION.AVEGARE_IMAGE_OVERLAP_X_IN_PIXELS: &#39;168&#39;</div><div>mirax.NONHIERLAYER_0_SECTION.AVEGARE_IMAGE_OVERLAP_Y_IN_PIXELS: &#39;168&#39;</div><div>mirax.NONHIERLAYER_0_SECTION.CAMERA_ROTATION: &#39;-0.33571611131822&#39;</div><div>mirax.NONHIERLAYER_0_SECTION.OBJECT_GUIDE_HYSTERESIS_X: &#39;134&#39;</div><div>mirax.NONHIERLAYER_0_SECTION.OBJECT_GUIDE_HYSTERESIS_Y: &#39;134&#39;</div><div>mirax.NONHIERLAYER_0_SECTION.SCANNED_FOV_COUNT: &#39;1360&#39;</div><div>mirax.NONHIERLAYER_0_SECTION.SCANNER_CAMERA_TYPE: &#39;Default camera&#39;</div><div>mirax.NONHIERLAYER_0_SECTION.SCANNER_HARDWARE_VERSION: &#39;v0.5&#39;</div><div>mirax.NONHIERLAYER_0_SECTION.SCANNER_SOFTWARE_VERSION: &#39;1,12,25,3&#39;</div><div>mirax.NONHIERLAYER_0_SECTION.SCANNING_TIME_IN_SEC: &#39;528&#39;</div><div>mirax.NONHIERLAYER_1_SECTION.VIMSLIDE_HISTOGRAM_DATA_CHANNEL_NUM: &#39;3&#39;</div><div>mirax.NONHIERLAYER_1_SECTION.VIMSLIDE_HISTOGRAM_DATA_CHANNEL_SIZE: &#39;256&#39;</div><div>mirax.NONHIERLAYER_1_SECTION.VIMSLIDE_HISTOGRAM_DATA_FORMAT_VERSION: &#39;257&#39;</div><div>mirax.NONHIERLAYER_2_SECTION.DATA_FORMAT_VERSION: &#39;258&#39;</div><div>mirax.NONHIERLAYER_3_SECTION.VIMSLIDE_POSITION_DATA_FORMAT_VERSION: &#39;257&#39;</div><div>mirax.NONHIERLAYER_4_LEVEL_0_SECTION.WALKEDMASK_IMAGE_FORMAT: &#39;GRAYPNG&#39;</div><div>openslide.background-color: &#39;FFFFFF&#39;</div><div>openslide.bounds-height: &#39;26648&#39;</div><div>openslide.bounds-width: &#39;27599&#39;</div><div>openslide.bounds-x: &#39;54036&#39;</div><div>openslide.bounds-y: &#39;96401&#39;</div><div>openslide.level-count: &#39;10&#39;</div><div>openslide.level[0].downsample: &#39;1&#39;</div><div>openslide.level[0].height: &#39;245448&#39;</div><div>openslide.level[0].width: &#39;116968&#39;</div><div>openslide.level[1].downsample: &#39;2&#39;</div><div>openslide.level[1].height: &#39;122724&#39;</div><div>openslide.level[1].width: &#39;58484&#39;</div><div>openslide.level[2].downsample: &#39;4&#39;</div><div>openslide.level[2].height: &#39;61362&#39;</div><div>openslide.level[2].width: &#39;29242&#39;</div><div>openslide.level[3].downsample: &#39;8&#39;</div><div>openslide.level[3].height: &#39;30681&#39;</div><div>openslide.level[3].width: &#39;14621&#39;</div><div>openslide.level[4].downsample: &#39;16&#39;</div><div>openslide.level[4].height: &#39;15340&#39;</div><div>openslide.level[4].width: &#39;7310&#39;</div><div>openslide.level[5].downsample: &#39;32&#39;</div><div>openslide.level[5].height: &#39;7670&#39;</div><div>openslide.level[5].width: &#39;3655&#39;</div><div>openslide.level[6].downsample: &#39;64&#39;</div><div>openslide.level[6].height: &#39;3835&#39;</div><div>openslide.level[6].width: &#39;1827&#39;</div><div>openslide.level[7].downsample: &#39;128&#39;</div><div>openslide.level[7].height: &#39;1917&#39;</div><div>openslide.level[7].width: &#39;913&#39;</div><div>openslide.level[8].downsample: &#39;256&#39;</div><div>openslide.level[8].height: &#39;958&#39;</div><div>openslide.level[8].width: &#39;456&#39;</div><div>openslide.level[9].downsample: &#39;512&#39;</div><div>openslide.level[9].height: &#39;479&#39;</div><div>openslide.level[9].width: &#39;228&#39;</div><div>openslide.mpp-x: &#39;0.20535898454321799&#39;</div><div>openslide.mpp-y: &#39;0.204395601349872&#39;</div><div>openslide.objective-power: &#39;20&#39;</div><div>openslide.quickhash-1: &#39;2c6cbc5cb75bd8c5fc7872fe45c9993016f3b9d29284aa266027e04656160f45&#39;</div><div>openslide.vendor: &#39;mirax&#39;</div></div><div><br></div><div><br></div></div><div class="gmail_extra"><br clear="all"><div><div dir="ltr"><br><div><div style="font-family:arial;font-size:small"><font color="#444444">Sincerely,</font></div><div style="font-family:arial;font-size:small"><font color="#444444"><br></font></div><div style="font-size:small"><font face="tahoma, sans-serif">Jonas Ogaard</font></div><div style="font-size:small"><font face="tahoma, sans-serif" color="#444444">Research Institute for Internal Medicine<br>Oslo University Hospital Rikshospitalet</font></div></div></div></div>
<br><div class="gmail_quote">On 13 September 2014 14:58,  <span dir="ltr">&lt;<a href="mailto:jcupitt@gmail.com" target="_blank">jcupitt@gmail.com</a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Jonas,<br>
<span class=""><br>
On 13 September 2014 13:02, Jonas Øgaard &lt;<a href="mailto:jonas.ogaard@rr-research.no">jonas.ogaard@rr-research.no</a>&gt; wrote:<br>
&gt; I&#39;m attempting to convert Mirax slides to ptif format for wider<br>
&gt; compatibility for in-department usage, however the files produced using<br>
&gt; syntax described<br>
&gt; <a href="https://github.com/openslide/openslide/wiki/OpenSlideAndVIPS" target="_blank">https://github.com/openslide/openslide/wiki/OpenSlideAndVIPS</a> does not yield<br>
&gt; valid files for Openslide to read.<br>
<br>
</span>The commands there convert files in formats that openslide can read,<br>
like mirax, to files that most systems should be able to read, like<br>
tif. What command did you run, what did you then try to load the files<br>
into, and what error message did you get?<br>
<br>
John<br>
</blockquote></div><br></div>