From yubrajgupta416 at gmail.com Mon Dec 21 07:38:10 2020 From: yubrajgupta416 at gmail.com (Yubraj Gupta) Date: Mon, 21 Dec 2020 12:38:10 +0000 Subject: I would like to know how openslide handle .scn extension WSI images. Message-ID: Hi there, I have downloaded some .scn images from here: http://openslide.cs.cmu.edu/download/openslide-testdata/Leica/ When I load these image (for example Leica-2.scn) using Openslide-python command, I can see that images has: level_dimension: ((106259, 306939), (26565, 76735), (6642, 19184), (1661, 4796), (416, 1201), (104, 298)) Level-downsample: (1.0, 3.9999746623105956, 15.998891062171904, 63.98593267568448, 255.4999069285211, 1025.858899070728) But when I load the same image with python-bioformats, It shows me that there are 27 series in that image. And series start from ((1616, 4668), .......(39168, 26048), ..........(39360, 23360),......(39360, 23360),.....(39168, 26048)) As I can see, the first three series are not important bcoz these are macro and map, I have to work from 4th series which is (39168, 26048) and I can also see that the same pyramid is repeated at last (39168, 26048) (I mean to say there are two pyramids within the same image). So my questions is, how does openslide handle .scn images and how does 27 series images are converted to 6 series images as shown in level_dimension above. Any suggestion. Have a nice day! Yubraj Gupta -------------- next part -------------- An HTML attachment was scrubbed... URL: